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Extract traces

extract_trace_table.Rd

Extract the raw trace from a list of fragments objects

Usage

extract_trace_table(fragments_list)

Arguments

fragments_list

a list of fragments objects

Value

A dataframe of the raw trace data. Each row representing a single scan.

Examples

fsa_list <- lapply(cell_line_fsa_list, function(x) x$clone())
# import data with read_fsa() to generate an equivalent list to cell_line_fsa_list
test_fragments <- trace(fsa_list, grouped = TRUE, metadata_data.frame = metadata)
#> Finding ladders
#> 
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#> Finding fragments
#> 
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#> Finding alleles
#> Calling repeats
#> Assigning index peaks

extracted_traces <- extract_trace_table(test_fragments)