plot_data_channels

Plot the raw data from the fsa file

Usage

plot_data_channels(fragments_list, sample_subset = NULL, n_facet_col = 1)

Arguments

fragments_list

A list of fragments_trace objects.

sample_subset

A character vector of unique ids for a subset of samples to plot

n_facet_col

A numeric value indicating the number of columns for faceting in the plot.

Value

a plot of the raw data channels

Details

A plot of the raw data channels in the fsa file.

These plots are made using base R plotting. Sometimes these fail to render in the viewing panes of IDEs (eg you get the error 'Error in plot.new(): figure margins too large)'. If this happens, try saving the plot as a pdf using traditional approaches (see grDevices::pdf). To get it to render in the IDE pane, trying matching n_facet_col to the number of samples you're attempting to plot, or using sample_subset to limit it to a single sample.

Examples

plot_data_channels(cell_line_fsa_list[1])