Plot Peak Data
plot_fragments.RdPlots peak data from a list of fragments.
Usage
plot_fragments(
fragments_list,
n_facet_col = 1,
sample_subset = NULL,
xlim = NULL,
ylim = NULL
)Arguments
- fragments_list
A list of fragments objects containing fragment data.
- n_facet_col
A numeric value indicating the number of columns for faceting in the plot.
- sample_subset
A character vector of unique ids for a subset of samples to plot
- xlim
the x limits of the plot. A numeric vector of length two.
- ylim
the y limits of the plot. A numeric vector of length two.
Examples
fsa_list <- lapply(cell_line_fsa_list, function(x) x$clone())
# import data with read_fsa() to generate an equivalent list to cell_line_fsa_list
fragments_list <- trace(fsa_list)
#> Finding ladders
#>
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#> Finding fragments
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#> Finding alleles
#> Calling repeats
#> Assigning index peaks
plot_fragments(fragments_list[1])
