Remove Samples from List

A convenient function to remove specific samples from a list of fragments.

Usage

remove_fragments(fragments_list, samples_to_remove)

Arguments

fragments_list

A list of fragments_repeats objects containing fragment data.

samples_to_remove

A character vector containing the unique IDs of the samples to be removed.

Value

A modified list of fragments with the specified samples removed.

Examples

gm_raw <- trace::example_data
metadata <- trace::metadata

test_fragments <- peak_table_to_fragments(
  gm_raw,
  data_format = "genemapper5",
  dye_channel = "B",
  min_size_bp = 300
)

all_fragment_names <- names(test_fragments)

# pull out unique ids of samples to remove
samples_to_remove <- all_fragment_names[c(1, 5, 10)]

samples_removed <- remove_fragments(test_fragments, samples_to_remove)