Convert Repeat Table to Repeats Fragments

This function converts a repeat table data frame into a list of fragments. class.

Usage

repeat_table_to_fragments(df, min_repeat = 0, max_repeat = 1000)

Arguments

df

A data frame containing the repeat data with the columns "unique_id", "repeats", "signal".

min_repeat

minimum repeat size

max_repeat

maximum repeat size

Value

A list of fragments objects.

Details

This function takes a repeat table data frame and converts it into a list of fragments objects. The column names must be "unique_id" (unique sample id), "repeats" (number of repeats), and "signal" (the signal associated with the number of repeats. for example a frequency count of reads.). The dataframe should be long (eg bind rows if the data are separate).

Examples

repeat_table <- trace::example_data_repeat_table
test_fragments <- repeat_table_to_fragments(repeat_table)